Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme no binding protein | PH7735_01359 | Not Available | Positive | 1494104 - 1494697 | 22166.3 |
| diguanylate cyclase dosc | PH7735_01360 | A0A0H2ZJS2 | Positive | 1494731 - 1495747 | 37172.0 |
| membrane-bound lytic murein transglycosylase b precursor | PH7735_01361 | Not Available | Negative | 1495800 - 1497029 | 44644.4 |
| murein l,d-transpeptidase | PH7735_01362 | Not Available | Negative | 1497110 - 1498732 | 60491.4 |
| putative protein involved in outer membrane biogenesis | PH7735_01363 | Not Available | Negative | 1498805 - 1501447 | 93926.8 |
| Trna-gly | Not Available | Not Available | Positive | 1501680 - 1501753 | Not Available |
| lipid a export atp-binding/permease protein msba | PH7735_01365 | Q56A55 | Positive | 1501978 - 1503777 | 64707.0 |
| lysm domain/bon superfamily protein | PH7735_01366 | P0ADE7 | Positive | 1503845 - 1504261 | 14773.4 |
| long-chain-fatty-acid--coa ligase | PH7735_01367 | P94547 | Positive | 1504513 - 1506399 | 69090.9 |
| glycerol kinase | PH7735_01368 | Q165D5 | Positive | 1506574 - 1508058 | 53552.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
