Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| para-aminobenzoate synthase component 1 | PH7735_01319 | F2RB79 | Positive | 1459599 - 1460723 | 41205.9 |
| 4-amino-4-deoxychorismate lyase | PH7735_01320 | Not Available | Positive | 1460678 - 1461325 | 23663.3 |
| sulfotransferase family protein | PH7735_01321 | Not Available | Positive | 1461482 - 1462204 | 28356.6 |
| aspartate--trna ligase | PH7735_01322 | Q1GIZ8 | Positive | 1462517 - 1464367 | 69323.9 |
| hypothetical protein | PH7735_01323 | Not Available | Positive | 1464540 - 1465925 | 51217.1 |
| hypothetical protein | PH7735_01324 | Not Available | Positive | 1465936 - 1467165 | 43998.6 |
| hypothetical protein | PH7735_01325 | P40586 | Positive | 1467229 - 1467945 | 26787.4 |
| transcriptional regulatory protein phop | PH7735_01326 | Not Available | Negative | 1467948 - 1468655 | 25330.4 |
| methylmalonyl-coa epimerase | PH7735_01327 | Q3IZP4 | Positive | 1468833 - 1469237 | 14381.2 |
| putative secreted protein | PH7735_01328 | Not Available | Positive | 1469312 - 1469608 | 10704.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
