Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclolysin | PH7735_01279 | Not Available | Positive | 1368198 - 1380533 | 427434.0 |
| hypothetical protein | PH7735_01280 | Not Available | Negative | 1380675 - 1382468 | 65485.6 |
| arylsulfatase | PH7735_01281 | Not Available | Negative | 1382533 - 1384143 | 59602.9 |
| protein involved in meta-pathway of phenol degradation | PH7735_01282 | Not Available | Negative | 1384143 - 1385126 | 35245.3 |
| dna-binding transcriptional dual regulator crp | PH7735_01283 | Not Available | Positive | 1385232 - 1385906 | 23942.1 |
| cyclolysin | PH7735_01284 | Not Available | Negative | 1385928 - 1388861 | 102197.0 |
| hypothetical protein | PH7735_01285 | Not Available | Positive | 1389163 - 1389942 | 28725.7 |
| inner membrane protein yiaw | PH7735_01286 | Not Available | Positive | 1390022 - 1390285 | 9438.69 |
| inner membrane protein yibh | PH7735_01287 | P0AFV1 | Positive | 1390282 - 1391409 | 40921.8 |
| cyclolysin | PH7735_01288 | Not Available | Positive | 1391657 - 1392928 | 43256.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
