Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamylputrescine oxidoreductase | PH7735_01269 | Q9Z3S3 | Positive | 1352946 - 1354223 | 44942.3 |
| hth-type transcriptional regulatory protein gabr | PH7735_01270 | P49309 | Negative | 1354207 - 1355652 | 52822.1 |
| putative ester cyclase | PH7735_01271 | Not Available | Negative | 1355723 - 1356106 | 14669.4 |
| n-substituted formamide deformylase precursor | PH7735_01272 | A0A1I9LN01 | Negative | 1356195 - 1357865 | 59506.7 |
| pyruvate dehydrogenase e1 component subunit beta | PH7735_01273 | Q72GU2 | Positive | 1358347 - 1360530 | 79248.5 |
| malonate decarboxylase, epsilon subunit | PH7735_01274 | Not Available | Positive | 1360527 - 1361564 | 37128.3 |
| hemolysin, chromosomal | PH7735_01275 | Not Available | Positive | 1361796 - 1363688 | 64824.5 |
| putative n-methylproline demethylase | PH7735_01276 | Not Available | Negative | 1363769 - 1365814 | 75096.4 |
| bacterial regulatory proteins, tetr family | PH7735_01277 | Not Available | Positive | 1365936 - 1366553 | 23620.3 |
| hemolysin, chromosomal | PH7735_01278 | Not Available | Positive | 1366719 - 1367942 | 42608.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
