Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ll-diaminopimelate aminotransferase | PH7735_00089 | Not Available | Positive | 105300 - 106475 | 42932.2 |
| dna translocase ftsk | PH7735_00090 | Q92L89 | Positive | 106491 - 109454 | 106577.0 |
| outer-membrane lipoprotein carrier protein precursor | PH7735_00091 | Not Available | Positive | 109521 - 110117 | 22005.4 |
| hypothetical protein | PH7735_00092 | Not Available | Negative | 110171 - 110758 | 22556.0 |
| auxin efflux carrier | PH7735_00093 | Not Available | Negative | 110836 - 111717 | 30607.7 |
| heat shock protein hspq | PH7735_00094 | Not Available | Positive | 111801 - 112127 | 12686.7 |
| molybdopterin biosynthesis protein moeb | PH7735_00095 | Not Available | Negative | 112162 - 112548 | 14172.0 |
| putative gamma-glutamyltransferase ywrd | PH7735_00096 | O05218 | Negative | 112552 - 114129 | 55404.6 |
| serine/threonine-protein kinase btrw | PH7735_00097 | Not Available | Negative | 114184 - 114630 | 16499.6 |
| anti-anti-sigma-b factor | PH7735_00098 | Not Available | Negative | 114689 - 115018 | 11981.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
