Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| liv-i protein f | PH7735_01249 | P21630 | Positive | 1322537 - 1323226 | 24916.2 |
| leucine-responsive regulatory protein | PH7735_01250 | Not Available | Negative | 1323230 - 1323694 | 17627.1 |
| 2-oxoacid ferredoxin oxidoreductase | PH7735_01251 | O07836 | Positive | 1323827 - 1327252 | 124554.0 |
| potassium efflux system kefa precursor | PH7735_01252 | Not Available | Positive | 1327425 - 1329104 | 61952.3 |
| 4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arnf | PH7735_01253 | Not Available | Negative | 1329101 - 1329466 | 12666.0 |
| decaprenyl-phosphate phosphoribosyltransferase | PH7735_01254 | P55585 | Negative | 1329463 - 1331043 | 58071.1 |
| dolichyl-phosphate-mannose-protein mannosyltransferase | PH7735_01255 | Not Available | Positive | 1331064 - 1332764 | 63059.4 |
| stalked cell differentiation-controlling protein | PH7735_01256 | P54443 | Positive | 1333068 - 1334162 | 40715.3 |
| isovaleryl-homoserine lactone synthase | PH7735_01257 | Not Available | Negative | 1334215 - 1334802 | 22333.2 |
| hypothetical protein | PH7735_01258 | Not Available | Positive | 1335359 - 1335739 | 14454.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
