Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01239 | Not Available | Positive | 1313517 - 1313993 | 17404.1 |
| pbp superfamily domain protein | PH7735_01240 | Q93KD6 | Negative | 1314051 - 1314854 | 28814.3 |
| glutamine transport atp-binding protein glnq | PH7735_01241 | Q8RCU0 | Negative | 1314851 - 1315561 | 25801.6 |
| sulfate transport system permease protein cysw | PH7735_01242 | Q93KD5 | Negative | 1315561 - 1316265 | 25430.9 |
| ribosomal rna large subunit methyltransferase l | PH7735_01243 | B6ELD3 | Negative | 1316460 - 1317638 | 43130.9 |
| multidrug transporter mdta | PH7735_01244 | Q7N3E3 | Positive | 1317707 - 1318522 | 28860.6 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | PH7735_01245 | Not Available | Positive | 1318708 - 1319844 | 40048.4 |
| liv-i protein h | PH7735_01246 | Not Available | Positive | 1319896 - 1320813 | 31461.8 |
| leucine/isoleucine/valine transporter permease subunit | PH7735_01247 | P21628 | Positive | 1320815 - 1321798 | 35264.0 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_01248 | P45073 | Positive | 1321791 - 1322540 | 26482.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
