Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoprotocatechuate degradation operon regulator, hpar | PH7735_01219 | Not Available | Positive | 1291216 - 1291710 | 18457.4 |
| putative efflux pump periplasmic linker ttga precursor | PH7735_01220 | Not Available | Positive | 1291697 - 1292737 | 37477.8 |
| multidrug transporter mdtc | PH7735_01221 | P25197 | Positive | 1292748 - 1295813 | 110346.0 |
| hypothetical protein | PH7735_01222 | Not Available | Negative | 1295919 - 1296221 | 11353.9 |
| sensor protein zras | PH7735_01223 | Q06067 | Positive | 1296750 - 1298726 | 72268.4 |
| transcriptional regulatory protein zrar | PH7735_01224 | Not Available | Negative | 1298730 - 1300079 | 50079.4 |
| hypothetical protein | PH7735_01225 | Not Available | Negative | 1300079 - 1300213 | 4672.75 |
| cytochrome c2 precursor | PH7735_01226 | A2Y4S9 | Negative | 1300217 - 1301503 | 46303.6 |
| formate dehydrogenase-o subunit gamma | PH7735_01227 | P0AEK8 | Negative | 1301512 - 1302711 | 43839.3 |
| formate dehydrogenase iron-sulfur subunit | PH7735_01228 | P27273 | Negative | 1302796 - 1303389 | 21239.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
