Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-butyrobetaine dioxygenase | PH7735_01209 | Q98KK0 | Positive | 1281228 - 1282376 | 41841.0 |
| phosphonate degradation operons associated hdig domain protein | PH7735_01210 | D0E8I5 | Positive | 1282373 - 1282969 | 21994.8 |
| hypothetical protein | PH7735_01211 | Not Available | Negative | 1282973 - 1283536 | 21428.3 |
| hypothetical protein | PH7735_01212 | P46837 | Negative | 1283651 - 1286032 | 85636.8 |
| transcriptional regulator slya | PH7735_01213 | Not Available | Positive | 1286166 - 1286642 | 17411.9 |
| alpha/beta hydrolase family protein | PH7735_01214 | Not Available | Positive | 1286639 - 1287532 | 33721.6 |
| putative dna-binding transcriptional regulator | PH7735_01215 | Not Available | Negative | 1287609 - 1288325 | 26516.8 |
| molybdate-binding periplasmic protein precursor | PH7735_01216 | P37329 | Positive | 1288498 - 1289301 | 28249.1 |
| molybdenum transport system permease protein modb | PH7735_01217 | P0AF02 | Positive | 1289294 - 1289989 | 24491.8 |
| sulfate/thiosulfate import atp-binding protein cysa | PH7735_01218 | Q98KI3 | Positive | 1289986 - 1291077 | 38866.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
