Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucuronide transporter | PH7735_01199 | Not Available | Negative | 1271936 - 1273150 | 42700.5 |
| hypothetical protein | PH7735_01200 | Not Available | Negative | 1273150 - 1273665 | 18917.1 |
| cyclopropane-fatty-acyl-phospholipid synthase | PH7735_01201 | Not Available | Negative | 1273658 - 1274815 | 43056.8 |
| hypothetical protein | PH7735_01202 | Not Available | Negative | 1274812 - 1275570 | 27980.8 |
| protoporphyrinogen oxidase | PH7735_01203 | Not Available | Negative | 1275567 - 1276856 | 48509.8 |
| sigma-k factor | PH7735_01204 | Q3IYV6 | Positive | 1277055 - 1277648 | 22769.5 |
| transcriptional activator chrr | PH7735_01205 | P40685 | Positive | 1277645 - 1278280 | 22411.1 |
| gcv operon activator | PH7735_01206 | Not Available | Negative | 1278277 - 1279167 | 31814.1 |
| 2-(hydroxymethyl)glutarate dehydrogenase | PH7735_01207 | P9WNY2 | Positive | 1279279 - 1280244 | 33929.9 |
| hth-type transcriptional activator ampr | PH7735_01208 | Not Available | Negative | 1280214 - 1281131 | 33721.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
