Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsenate reductase | PH7735_01179 | P76569 | Negative | 1252125 - 1252463 | 12548.3 |
| dihydroorotate dehydrogenase (quinone) | PH7735_01180 | B9KNA2 | Negative | 1252460 - 1253518 | 36963.2 |
| hypothetical protein | PH7735_01181 | Not Available | Negative | 1253515 - 1253856 | 12305.5 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | PH7735_01182 | P29240 | Positive | 1253966 - 1255540 | 55544.6 |
| hypothetical protein | PH7735_01183 | Not Available | Positive | 1255602 - 1255907 | 11598.9 |
| putative pep-cterm system tpr-repeat lipoprotein | PH7735_01184 | O67178 | Negative | 1255911 - 1257650 | 63483.8 |
| tpr repeat-containing protein yrrb | PH7735_01185 | Not Available | Negative | 1257655 - 1259409 | 64020.4 |
| hypothetical protein | PH7735_01186 | O34906 | Positive | 1259491 - 1260153 | 24399.9 |
| putative allantoin catabolism protein | PH7735_01187 | P75713 | Positive | 1260263 - 1261084 | 30742.4 |
| glyceraldehyde-3-phosphate dehydrogenase | PH7735_01188 | Not Available | Positive | 1261205 - 1262203 | 35624.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
