Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyl-gamma-aminobutyrate hydrolase puud | PH7735_01159 | O33341 | Positive | 1227253 - 1228032 | 28043.2 |
| hemolysin, chromosomal | PH7735_01160 | Not Available | Negative | 1228055 - 1230232 | 77181.2 |
| hypothetical protein | PH7735_01161 | Not Available | Negative | 1230605 - 1230976 | 13819.5 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_01162 | O86034 | Negative | 1230986 - 1231738 | 25910.2 |
| hypothetical protein | PH7735_01163 | Not Available | Positive | 1231878 - 1232834 | 35336.4 |
| molybdopterin biosynthesis protein moeb | PH7735_01164 | Not Available | Positive | 1232948 - 1233364 | 15189.1 |
| putative protein-s-isoprenylcysteine methyltransferase | PH7735_01165 | Not Available | Positive | 1233361 - 1233810 | 17083.2 |
| nad(p) transhydrogenase subunit alpha | PH7735_01166 | Q9ALA2 | Positive | 1233948 - 1235519 | 55654.5 |
| nad(p) transhydrogenase subunit beta | PH7735_01167 | P43010 | Positive | 1235533 - 1236993 | 50642.2 |
| cyclolysin | PH7735_01168 | Not Available | Negative | 1237046 - 1238575 | 52235.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
