Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase catalytic domain | PH7735_00079 | Not Available | Negative | 96267 - 96761 | 18609.2 |
| gtp cyclohydrolase-2 | PH7735_00080 | P43525 | Negative | 96758 - 97849 | 38793.7 |
| transcriptional regulatory protein yycf | PH7735_00081 | P37478 | Positive | 98015 - 98701 | 25796.2 |
| disulfide-bond oxidoreductase yfcg | PH7735_00082 | P20432 | Negative | 98888 - 99517 | 23347.1 |
| exodeoxyribonuclease iii | PH7735_00083 | Not Available | Positive | 99720 - 100508 | 29636.9 |
| thioredoxin-m | PH7735_00084 | P12243 | Positive | 100655 - 101569 | 32067.8 |
| lon protease 2 | PH7735_00085 | Not Available | Positive | 101596 - 102240 | 24334.1 |
| hypothetical protein | PH7735_00086 | Q16E16 | Positive | 102237 - 102422 | 6878.27 |
| 2-octaprenyl-6-methoxyphenol hydroxylase | PH7735_00087 | Q2RMZ4 | Negative | 102483 - 103697 | 43584.1 |
| glutamyl-trna(gln) amidotransferase subunit a | PH7735_00088 | A2BWS5 | Positive | 103784 - 105115 | 47008.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
