Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-carboxymuconolactone decarboxylase | PH7735_01109 | Not Available | Positive | 1172988 - 1173377 | 14486.5 |
| cell division protein mraz | PH7735_01110 | Q1GF20 | Positive | 1174085 - 1174582 | 18556.7 |
| ribosomal rna small subunit methyltransferase h | PH7735_01111 | Q5LU79 | Positive | 1174586 - 1175578 | 36013.1 |
| putative secreted (periplasmic) protein | PH7735_01112 | Not Available | Positive | 1175578 - 1175925 | 13093.7 |
| peptidoglycan synthase ftsi | PH7735_01113 | B8H0A0 | Positive | 1175922 - 1177706 | 64574.9 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | PH7735_01114 | Q89FU2 | Positive | 1177728 - 1179209 | 51994.7 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | PH7735_01115 | P11880 | Positive | 1179206 - 1180648 | 50147.0 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | PH7735_01116 | Q5LU74 | Positive | 1180649 - 1181731 | 38763.2 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | PH7735_01117 | Q5LU71 | Positive | 1181901 - 1183304 | 49598.8 |
| hypothetical protein | PH7735_01118 | Not Available | Positive | 1183455 - 1183976 | 18905.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
