Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsular polysaccharide biosynthesis protein | PH7735_01099 | Not Available | Negative | 1162279 - 1163406 | 41979.6 |
| phosphoenolpyruvate-protein phosphotransferase | PH7735_01100 | P37177 | Negative | 1163546 - 1165792 | 82942.6 |
| aspartokinase | PH7735_01101 | O69077 | Negative | 1166149 - 1167387 | 44300.1 |
| c signal | PH7735_01102 | Not Available | Negative | 1167529 - 1168173 | 23007.2 |
| hypothetical protein | PH7735_01103 | Not Available | Negative | 1168199 - 1168654 | 16291.2 |
| nudix domain protein | PH7735_01104 | Not Available | Negative | 1168736 - 1169218 | 18281.7 |
| l-ala-d/l-glu epimerase | PH7735_01105 | Not Available | Negative | 1169398 - 1170519 | 39999.0 |
| cupin domain protein | PH7735_01106 | D0CY60 | Negative | 1170516 - 1171040 | 19296.8 |
| alcohol dehydrogenase | PH7735_01107 | P12311 | Positive | 1171383 - 1172432 | 36600.2 |
| hypothetical protein | PH7735_01108 | Not Available | Positive | 1172432 - 1172836 | 15014.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
