Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit 2 precursor | PH7735_01079 | P08306 | Positive | 1144491 - 1145342 | 31498.0 |
| protoheme ix farnesyltransferase | PH7735_01080 | Q5LNX8 | Positive | 1145394 - 1146332 | 33825.8 |
| hypothetical protein | PH7735_01081 | P08302 | Positive | 1146334 - 1146495 | 5986.23 |
| cytochrome c oxidase assembly protein ctag | PH7735_01082 | Q5LNX9 | Positive | 1146495 - 1147070 | 21302.2 |
| cytochrome c oxidase subunit 3 | PH7735_01083 | P06030 | Positive | 1147102 - 1147905 | 30330.1 |
| hypothetical protein | PH7735_01084 | A4IHH4 | Positive | 1148000 - 1148677 | 25034.3 |
| threonine synthase | PH7735_01085 | P29363 | Positive | 1148682 - 1150070 | 50821.7 |
| protease 3 precursor | PH7735_01086 | Q1RJ61 | Positive | 1150067 - 1151329 | 46083.5 |
| putative ribosomal n-acetyltransferase ydaf | PH7735_01087 | Not Available | Positive | 1151329 - 1151919 | 22602.0 |
| hypothetical protein | PH7735_01088 | Not Available | Positive | 1152004 - 1152816 | 30092.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
