Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin carboxylase | PH7735_01069 | P24182 | Negative | 1132136 - 1133488 | 48629.2 |
| biotin carboxyl carrier protein of acetyl-coa carboxylase | PH7735_01070 | Q5XAE6 | Negative | 1133498 - 1133992 | 16990.1 |
| tetrathionate response regulatory protein ttrr | PH7735_01071 | Not Available | Negative | 1134163 - 1134705 | 20621.9 |
| long-chain-fatty-acid--coa ligase | PH7735_01072 | Q9EY88 | Positive | 1134819 - 1136333 | 55317.4 |
| d-beta-hydroxybutyrate dehydrogenase | PH7735_01073 | Q9X6U2 | Positive | 1136326 - 1137129 | 27738.0 |
| putative succinyl-coa:3-ketoacid coenzyme a transferase subunit b | PH7735_01074 | B0RVK3 | Negative | 1137202 - 1137831 | 22250.0 |
| putative succinyl-coa:3-ketoacid coenzyme a transferase subunit a | PH7735_01075 | B0RVK4 | Negative | 1137831 - 1138553 | 25952.2 |
| dna topoisomerase 1 | PH7735_01076 | Q1RIM1 | Negative | 1138705 - 1141308 | 96696.1 |
| dna protecting protein dpra | PH7735_01077 | P43862 | Negative | 1141573 - 1142712 | 40088.0 |
| protease tldd | PH7735_01078 | P0AGG9 | Negative | 1142888 - 1144309 | 49615.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
