Shimia thalassica

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia thalassica is a Gram-negative bacterium characterized by a single replicon. Its genomic sequence is available under the accession number CYTW00000000.1. As a member of the microbial community, Shimia thalassica is notable for its specific ecological niche, likely contributing to the dynamics of its environment. The classification as Gram-negative indicates that Shimia thalassica possesses a thin peptidoglycan layer and an outer membrane, which can affect its interactions with other organisms and its response to antibiotics. The presence of a single replicon suggests a streamlined genetic organization, which may influence its replication and survival strategies. Understanding the traits of Shimia thalassica can provide insights into its role in marine ecosystems, particularly in nutrient cycling and interactions with other marine microorganisms. The genomic data available allows for further exploration of its metabolic pathways and potential applications in biotechnology or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia thalassica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phaeobacter sp. CECT 7735 genome assembly

Gene Summary

Adenine Count

954692 bp

Thymine Count

975031 bp

Guanine Count

1249958 bp

Cytosine Count

1178635 bp

Genome Length

4358316 bp

Protein-coding Genes

4047 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
biotin carboxylasePH7735_01069P24182Negative1132136 - 113348848629.2
biotin carboxyl carrier protein of acetyl-coa carboxylasePH7735_01070Q5XAE6Negative1133498 - 113399216990.1
tetrathionate response regulatory protein ttrrPH7735_01071Not AvailableNegative1134163 - 113470520621.9
long-chain-fatty-acid--coa ligasePH7735_01072Q9EY88Positive1134819 - 113633355317.4
d-beta-hydroxybutyrate dehydrogenasePH7735_01073Q9X6U2Positive1136326 - 113712927738.0
putative succinyl-coa:3-ketoacid coenzyme a transferase subunit bPH7735_01074B0RVK3Negative1137202 - 113783122250.0
putative succinyl-coa:3-ketoacid coenzyme a transferase subunit aPH7735_01075B0RVK4Negative1137831 - 113855325952.2
dna topoisomerase 1PH7735_01076Q1RIM1Negative1138705 - 114130896696.1
dna protecting protein dpraPH7735_01077P43862Negative1141573 - 114271240088.0
protease tlddPH7735_01078P0AGG9Negative1142888 - 114430949615.8

Displaying genes 1101 – 1110 of 4113 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

313 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 313 metabolites

Health Effects

No health effects information available for this bacterium.