Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tmao/dmso reductase | PH7735_01059 | Q8R086 | Positive | 1123304 - 1124581 | 46749.1 |
| cytochrome c2 | PH7735_01060 | P23021 | Positive | 1124565 - 1125641 | 38208.2 |
| cytochrome c2 | PH7735_01061 | Q8UJ37 | Positive | 1125645 - 1126355 | 25794.7 |
| sulfide dehydrogenase | PH7735_01062 | Q06530 | Positive | 1126388 - 1127650 | 44420.0 |
| atp-dependent clp protease proteolytic subunit | PH7735_01063 | Q1GGF6 | Positive | 1127962 - 1128594 | 23513.1 |
| atp-dependent clp protease atp-binding subunit clpx | PH7735_01064 | Q165G0 | Positive | 1128734 - 1129996 | 45731.9 |
| nadh dehydrogenase | PH7735_01065 | Not Available | Positive | 1130180 - 1130563 | 14533.8 |
| putative phospholipid abc transporter-binding protein mlad | PH7735_01066 | Not Available | Positive | 1130579 - 1131028 | 14926.8 |
| hypothetical protein | PH7735_01067 | Not Available | Positive | 1131025 - 1131528 | 18064.5 |
| leucyl/phenylalanyl-trna--protein transferase | PH7735_01068 | B9KJU5 | Negative | 1131474 - 1132136 | 24315.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
