Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative inner membrane protein | PH7735_01049 | Not Available | Negative | 1115552 - 1116631 | 37420.3 |
| biofilm growth-associated repressor | PH7735_01050 | Not Available | Negative | 1116698 - 1117039 | 12821.4 |
| thioredoxin-related protein | PH7735_01051 | Not Available | Negative | 1117230 - 1117598 | 13936.5 |
| thiol:disulfide interchange protein dsbd precursor | PH7735_01052 | Q9KDL8 | Positive | 1117670 - 1118407 | 26305.3 |
| thioredoxin-related protein | PH7735_01053 | Not Available | Positive | 1118437 - 1119015 | 22435.7 |
| cytochrome c | PH7735_01054 | Not Available | Positive | 1119209 - 1119682 | 16158.3 |
| sulfur oxidation protein soxy | PH7735_01055 | Not Available | Positive | 1119720 - 1120136 | 13505.1 |
| putative secreted protein | PH7735_01056 | Not Available | Positive | 1120155 - 1120484 | 11942.3 |
| cytochrome c | PH7735_01057 | Q939U1 | Positive | 1120559 - 1121413 | 31113.7 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | PH7735_01058 | P21588 | Positive | 1121526 - 1123223 | 62812.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
