Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative metal-dependent enzyme of the double-stranded beta helix superfamily protein | PH7735_01039 | Not Available | Positive | 1106925 - 1107458 | 19510.8 |
| proline--trna ligase | PH7735_01040 | Q5LUD3 | Positive | 1107559 - 1108911 | 50909.6 |
| hemolysin, chromosomal | PH7735_01041 | O33752 | Negative | 1108988 - 1110808 | 61592.3 |
| lipoprotein-releasing system transmembrane protein lolc | PH7735_01042 | P57061 | Positive | 1110976 - 1112262 | 46511.9 |
| lipoprotein-releasing system atp-binding protein lold | PH7735_01043 | Q5LUD0 | Positive | 1112255 - 1112941 | 24498.6 |
| hypothetical protein | PH7735_01044 | Not Available | Negative | 1113056 - 1113502 | 14885.7 |
| putative domain 1 | PH7735_01045 | Not Available | Negative | 1113513 - 1113923 | 14362.4 |
| cytochrome c, mono-and diheme variants | PH7735_01046 | Not Available | Positive | 1114055 - 1114426 | 13154.8 |
| cytochrome c, mono-and diheme variants | PH7735_01047 | Not Available | Positive | 1114446 - 1114844 | 14172.1 |
| dna-3-methyladenine glycosylase 1 | PH7735_01048 | Not Available | Negative | 1114848 - 1115504 | 24164.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
