Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine-responsive regulatory protein | PH7735_00999 | P55658 | Negative | 1058324 - 1058773 | 17024.7 |
| putative hydrolase yxep | PH7735_01000 | P45493 | Positive | 1058895 - 1060046 | 41019.5 |
| putative diaminopropionate ammonia-lyase | PH7735_01001 | P66901 | Positive | 1060043 - 1061233 | 41704.2 |
| putative peptidase | PH7735_01002 | O58885 | Positive | 1061230 - 1062396 | 42832.3 |
| maleate isomerase | PH7735_01003 | Not Available | Positive | 1062405 - 1063151 | 26529.9 |
| enamine/imine deaminase | PH7735_01004 | O30825 | Positive | 1063218 - 1063568 | 12477.0 |
| adenylate cyclase 2 | PH7735_01005 | P40138 | Negative | 1063604 - 1065322 | 61792.7 |
| microbial collagenase precursor | PH7735_01006 | Q58863 | Negative | 1065329 - 1070206 | 171038.0 |
| fecr protein | PH7735_01007 | Not Available | Negative | 1070206 - 1072563 | 84710.0 |
| morphology and auto-aggregation control protein | PH7735_01008 | Q9X5P2 | Negative | 1072664 - 1073569 | 33477.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
