Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator puur | PH7735_00989 | Not Available | Negative | 1044042 - 1044623 | 21161.0 |
| acyl-coa dehydrogenase | PH7735_00990 | Q54R47 | Positive | 1044882 - 1046096 | 44130.1 |
| hypothetical protein | PH7735_00991 | Not Available | Negative | 1046104 - 1046361 | 10183.3 |
| putative xanthine dehydrogenase subunit e | PH7735_00992 | P10351 | Positive | 1046486 - 1047946 | 52292.4 |
| aldehyde oxidoreductase | PH7735_00993 | Q54FB7 | Positive | 1047958 - 1050273 | 83843.6 |
| xanthine dehydrogenase accessory protein xdhc | PH7735_00994 | Not Available | Positive | 1050278 - 1051168 | 31413.8 |
| guanine deaminase | PH7735_00995 | Not Available | Positive | 1051264 - 1052577 | 48241.2 |
| efflux pump periplasmic linker bepf | PH7735_00996 | Q8FWV8 | Positive | 1052736 - 1053869 | 40432.0 |
| efflux pump membrane transporter bepg | PH7735_00997 | Q8FWV9 | Positive | 1053876 - 1057010 | 111014.0 |
| hypothetical protein | PH7735_00998 | Not Available | Positive | 1057116 - 1058327 | 45858.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
