Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siroheme synthase | PH7735_00979 | Q2Y6L7 | Negative | 1029587 - 1030981 | 50247.7 |
| nitrate reductase | PH7735_00980 | Q06457 | Negative | 1031003 - 1033627 | 93763.7 |
| assimilatory nitrite reductase | PH7735_00981 | Not Available | Negative | 1033624 - 1033962 | 12195.4 |
| nitrite reductase | PH7735_00982 | P42435 | Negative | 1033982 - 1036438 | 88259.6 |
| bicarbonate transport atp-binding protein cmpd | PH7735_00983 | P38046 | Negative | 1036442 - 1038127 | 61901.0 |
| bicarbonate transport system permease protein cmpb | PH7735_00984 | Q55106 | Negative | 1038133 - 1039215 | 39350.6 |
| nitrate transport protein nrta precursor | PH7735_00985 | P73450 | Negative | 1039358 - 1040722 | 50097.4 |
| nitrate transport protein nrta precursor | PH7735_00986 | Q44292 | Negative | 1040981 - 1042156 | 42073.9 |
| putative transcriptional regulatory protein pdtar | PH7735_00987 | Not Available | Negative | 1042156 - 1042737 | 21158.6 |
| succinyl-coa:(r)-benzylsuccinate coa-transferase subunit bbsf | PH7735_00988 | Q7CXU0 | Negative | 1042911 - 1044020 | 39795.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
