Pseudonocardia sp. HH130630-07

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia sp. HH130630-07 is a rod-shaped bacterium notable for possessing three replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic diversity. The presence of multiple replicons can often enhance the organism's ability to regulate gene expression and respond to environmental changes effectively. The genomic data for Pseudonocardia sp. HH130630-07 is archived under the accessions NZ_CP013854.1, NZ_CP013855.1, and NZ_CP013856.1. These accessions suggest that the organism has been sequenced, providing insights into its genetic makeup and potential functionalities. Understanding the characteristics and genomic architecture of Pseudonocardia sp. HH130630-07 is essential for exploring its ecological roles. Members of the Pseudonocardia genus are typically found in soil and are known for their interactions with other microorganisms, including their potential for antibiotic production. This highlights a significant ecological insight: the adaptability and metabolic versatility afforded by multiple replicons may allow Pseudonocardia sp. HH130630-07 to thrive in diverse environments and engage in complex interactions within microbial communities. Such interactions can impact nutrient cycling and the stability of ecosystems where these bacteria reside.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. HH130630-07
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence.

Gene Summary

Adenine Count

53625 bp

Thymine Count

51275 bp

Guanine Count

135824 bp

Cytosine Count

134994 bp

Genome Length

375718 bp

Protein-coding Genes

298 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
translation initiation factor if-1AFB00_RS15240Not AvailablePositive3131976 - 31321978503.45
50s ribosomal protein l36AFB00_RS15245Not AvailablePositive3132244 - 31323574329.6
30s ribosomal protein s13AFB00_RS15250Not AvailablePositive3132532 - 313291214169.3
30s ribosomal protein s11AFB00_RS15255Not AvailablePositive3132912 - 313331914418.4
30s ribosomal protein s4AFB00_RS15260Not AvailablePositive3133338 - 313394323534.4
dna-directed rna polymerase subunit alphaAFB00_RS15265Not AvailablePositive3134037 - 313508937589.6
50s ribosomal protein l17AFB00_RS15270Not AvailablePositive3135092 - 313576023183.9
trna pseudouridine(38-40) synthase truaAFB00_RS15275Not AvailablePositive3135835 - 313665329464.2
nucleoside deaminaseAFB00_RS15280Not AvailablePositive3136687 - 313713015669.5
type vii secretion protein eccbAFB00_RS15285Not AvailablePositive3137191 - 313861247205.6

Displaying genes 3381 – 3390 of 6323 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.