Pseudonocardia sp. HH130630-07

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia sp. HH130630-07 is a rod-shaped bacterium notable for possessing three replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic diversity. The presence of multiple replicons can often enhance the organism's ability to regulate gene expression and respond to environmental changes effectively. The genomic data for Pseudonocardia sp. HH130630-07 is archived under the accessions NZ_CP013854.1, NZ_CP013855.1, and NZ_CP013856.1. These accessions suggest that the organism has been sequenced, providing insights into its genetic makeup and potential functionalities. Understanding the characteristics and genomic architecture of Pseudonocardia sp. HH130630-07 is essential for exploring its ecological roles. Members of the Pseudonocardia genus are typically found in soil and are known for their interactions with other microorganisms, including their potential for antibiotic production. This highlights a significant ecological insight: the adaptability and metabolic versatility afforded by multiple replicons may allow Pseudonocardia sp. HH130630-07 to thrive in diverse environments and engage in complex interactions within microbial communities. Such interactions can impact nutrient cycling and the stability of ecosystems where these bacteria reside.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. HH130630-07
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence.

Gene Summary

Adenine Count

17157 bp

Thymine Count

17592 bp

Guanine Count

41612 bp

Cytosine Count

42324 bp

Genome Length

118685 bp

Protein-coding Genes

120 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposase family proteinAFB00_RS29160Not AvailableNegative15 - 78828186.5
transposaseAFB00_RS35270Not AvailableNegative972 - 182530365.1
ribbon-helix-helix protein, copg familyAFB00_RS29170Not AvailablePositive1915 - 223811604.5
transposaseAFB00_RS32505Not AvailableNegative2460 - 335733007.5
transposaseAFB00_RS33655Not AvailableNegative3512 - 36435110.08
transposase family proteinAFB00_RS29180Not AvailableNegative3666 - 446028785.7
iclr family transcriptional regulator c-terminal domain-containing proteinAFB00_RS29185Not AvailableNegative4599 - 541729109.0
flavin reductase family proteinAFB00_RS29190Not AvailablePositive5562 - 611619798.3
4-hydroxyphenylacetate 3-hydroxylase n-terminal domain-containing proteinAFB00_RS29195Not AvailablePositive6184 - 776459208.3
dioxygenaseAFB00_RS29200Not AvailablePositive7778 - 865331098.1

Displaying genes 1 – 10 of 6323 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.