Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmp synthase-like glutamine amidotransferase | CLV88_102154 | Not Available | Negative | 965211 - 965984 | 28592.6 |
| gntr family transcriptional regulator | CLV88_102155 | Not Available | Negative | 965981 - 966670 | 26637.3 |
| l-threonine ammonia-lyase | CLV88_102156 | Not Available | Negative | 966706 - 967671 | 33721.5 |
| aspartate dehydrogenase | CLV88_102157 | Not Available | Negative | 967676 - 968479 | 27769.5 |
| amino acid abc transporter atp-binding protein (paat family) | CLV88_102158 | Not Available | Negative | 968544 - 969359 | 29900.5 |
| amino acid abc transporter membrane protein 2 (paat family) | CLV88_102159 | Not Available | Negative | 969359 - 970027 | 24502.5 |
| amino acid abc transporter membrane protein 1 (paat family) | CLV88_102160 | Not Available | Negative | 970031 - 970696 | 24703.1 |
| amino acid abc transporter substrate-binding protein (paat family) | CLV88_102161 | Not Available | Negative | 970762 - 971607 | 30076.6 |
| xaa-pro dipeptidase | CLV88_102162 | Not Available | Positive | 971791 - 972948 | 42137.8 |
| phytanoyl-coa dioxygenase phyh | CLV88_102163 | Not Available | Positive | 972972 - 973778 | 30363.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
