Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_102144 | Not Available | Negative | 958200 - 959159 | 34546.0 |
| outer membrane protein | CLV88_102145 | Not Available | Negative | 959234 - 960649 | 50844.2 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | CLV88_102146 | Not Available | Negative | 960692 - 961345 | 23540.1 |
| Trna-cys | Not Available | Not Available | Positive | 961576 - 961649 | Not Available |
| site-specific recombinase xerc | CLV88_102148 | Not Available | Negative | 961718 - 962749 | 40047.3 |
| hypothetical protein | CLV88_102149 | Not Available | Negative | 962746 - 962937 | 6842.05 |
| arc-like dna binding dprotein | CLV88_102150 | Not Available | Negative | 962962 - 963156 | 7315.72 |
| arc-like dna binding dprotein | CLV88_102151 | Not Available | Positive | 963280 - 963555 | 10338.4 |
| hypothetical protein | CLV88_102152 | Not Available | Negative | 963558 - 964199 | 23844.1 |
| hypothetical protein | CLV88_102153 | Not Available | Positive | 964573 - 964773 | 7059.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
