Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| valyl-trna synthetase | CLV88_102134 | Not Available | Positive | 946663 - 949752 | 114844.0 |
| enoyl-coa hydratase/carnithine racemase | CLV88_102135 | Not Available | Negative | 949862 - 950653 | 28199.4 |
| histidinol-phosphate aminotransferase | CLV88_102136 | Not Available | Positive | 950774 - 951877 | 39366.2 |
| hypothetical protein | CLV88_102137 | Not Available | Positive | 951955 - 952131 | 6573.41 |
| alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase | CLV88_102138 | Not Available | Negative | 952128 - 953330 | 43373.1 |
| atp-binding cassette subfamily b protein | CLV88_102139 | Not Available | Positive | 953385 - 955388 | 72134.2 |
| hypothetical protein | CLV88_102140 | Not Available | Negative | 955389 - 956069 | 24431.4 |
| hypothetical protein | CLV88_102141 | Not Available | Positive | 956142 - 956882 | 27249.3 |
| translation elongation factor p (ef-p) | CLV88_102142 | Not Available | Negative | 956932 - 957495 | 21025.1 |
| hypothetical protein | CLV88_102143 | Not Available | Positive | 957713 - 958033 | 11384.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
