Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonucleoside-diphosphate reductase class ii | CLV88_102114 | Not Available | Negative | 924974 - 927256 | 83326.6 |
| hypothetical protein | CLV88_102115 | Not Available | Positive | 927423 - 927854 | 16267.5 |
| atp phosphoribosyltransferase catalytic subunit | CLV88_102116 | Not Available | Negative | 927910 - 928599 | 24943.9 |
| atp phosphoribosyltransferase regulatory subunit | CLV88_102117 | Not Available | Negative | 928596 - 929681 | 39842.5 |
| histidyl-trna synthetase | CLV88_102118 | Not Available | Negative | 929681 - 931183 | 54570.8 |
| slyx protein | CLV88_102119 | Not Available | Positive | 931321 - 931515 | 7345.76 |
| 5-bromo-4-chloroindolyl phosphate hydrolysis protein | CLV88_102120 | Not Available | Positive | 931834 - 932715 | 31871.2 |
| uncharacterized protein yaan involved in tellurite resistance | CLV88_102121 | Not Available | Positive | 932737 - 933936 | 43488.3 |
| protein of unknown function (duf2927) | CLV88_102122 | Not Available | Positive | 933933 - 934853 | 33437.6 |
| membrane protease subunit (stomatin/prohibitin family) | CLV88_102123 | Not Available | Positive | 934877 - 936019 | 41239.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
