Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidine kinase | CLV88_102104 | Not Available | Positive | 915326 - 915913 | 21710.9 |
| aspartate carbamoyltransferase | CLV88_102105 | Not Available | Positive | 916062 - 917018 | 35343.9 |
| hypothetical protein | CLV88_102106 | Not Available | Positive | 917122 - 917694 | 19936.0 |
| hypothetical protein | CLV88_102107 | Not Available | Positive | 917691 - 918188 | 18747.9 |
| hypothetical protein | CLV88_102108 | Not Available | Positive | 918185 - 918625 | 15742.2 |
| hypothetical protein | CLV88_102109 | Not Available | Positive | 918622 - 919155 | 20262.6 |
| dihydroorotase | CLV88_102110 | Not Available | Positive | 919171 - 920454 | 45874.1 |
| acyl-phosphate glycerol-3-phosphate acyltransferase | CLV88_102111 | Not Available | Positive | 920454 - 921062 | 21129.4 |
| yhs domain-containing protein | CLV88_102112 | Not Available | Positive | 921622 - 922095 | 16887.6 |
| aldehyde dehydrogenase family protein | CLV88_102113 | Not Available | Negative | 924160 - 924345 | 6626.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
