Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidylcholine synthase | CLV88_10294 | Not Available | Positive | 903833 - 904528 | 26104.4 |
| methylated-dna-[protein]-cysteine s-methyltransferase | CLV88_10295 | Not Available | Negative | 904525 - 904983 | 16322.7 |
| isoleucyl-trna synthetase | CLV88_10296 | Not Available | Negative | 905088 - 908021 | 110224.0 |
| hypothetical protein | CLV88_10297 | Not Available | Negative | 908223 - 908651 | 16272.2 |
| hemoglobin | CLV88_10298 | Not Available | Positive | 908809 - 909216 | 15142.2 |
| putative membrane protein | CLV88_10299 | Not Available | Negative | 909279 - 910268 | 34687.5 |
| hypothetical protein | CLV88_102100 | Not Available | Negative | 910265 - 911824 | 56417.1 |
| trna pseudouridine38-40 synthase | CLV88_102101 | Not Available | Positive | 911870 - 912559 | 25046.6 |
| beta-ketodecanoyl-[acyl-carrier-protein] synthase | CLV88_102102 | Not Available | Positive | 912710 - 913831 | 41031.9 |
| regulatory luxr family protein | CLV88_102103 | Not Available | Negative | 914245 - 915123 | 32703.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
