Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10284 | Not Available | Negative | 893709 - 893936 | 8645.4 |
| pentapeptide repeat protein | CLV88_10285 | Not Available | Negative | 894047 - 895735 | 60478.2 |
| hypothetical protein | CLV88_10286 | Not Available | Positive | 895897 - 896415 | 18760.4 |
| uncharacterized protein duf3833 | CLV88_10287 | Not Available | Negative | 896461 - 896988 | 19607.2 |
| trna 2-thiocytidine biosynthesis protein ttca | CLV88_10288 | Not Available | Positive | 897094 - 897987 | 33879.1 |
| diguanylate cyclase/phosphodiesterase | CLV88_10289 | Not Available | Positive | 898049 - 899602 | 57086.9 |
| protein translocase subunit yidc | CLV88_10290 | Not Available | Positive | 899713 - 901533 | 66826.1 |
| hypothetical protein | CLV88_10291 | Not Available | Positive | 901533 - 902276 | 27197.1 |
| gtp-binding protein | CLV88_10292 | Not Available | Positive | 902276 - 902929 | 23899.9 |
| 3-hydroxyisobutyrate dehydrogenase/putative dehydrogenase | CLV88_10293 | Not Available | Positive | 902975 - 903784 | 28799.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
