Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | CLV88_10264 | Not Available | Positive | 875605 - 876498 | 32227.8 |
| electron-transferring-flavoprotein dehydrogenase | CLV88_10265 | Not Available | Negative | 876614 - 878263 | 59793.5 |
| transcription elongation factor grea | CLV88_10266 | Not Available | Positive | 878515 - 878985 | 17026.2 |
| hypothetical protein | CLV88_10267 | Not Available | Positive | 879042 - 880064 | 37150.5 |
| helix-turn-helix protein | CLV88_10268 | Not Available | Negative | 880134 - 880847 | 26463.0 |
| glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii) | CLV88_10269 | Not Available | Positive | 881131 - 882048 | 32140.1 |
| hypothetical protein | CLV88_10270 | Not Available | Positive | 882207 - 882785 | 20690.8 |
| hypothetical protein | CLV88_10271 | Not Available | Positive | 882804 - 883145 | 12311.3 |
| molybdopterin molybdotransferase | CLV88_10272 | Not Available | Negative | 883316 - 885421 | 75379.3 |
| molybdopterin guanine dinucleotide biosynthesis accessory protein mobb | CLV88_10273 | Not Available | Negative | 885418 - 885909 | 18006.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
