Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10254 | Not Available | Negative | 865579 - 865737 | 5868.15 |
| lysr family transcriptional regulator | CLV88_10255 | Not Available | Positive | 865846 - 866793 | 34955.9 |
| eama domain-containing membrane protein rard | CLV88_10256 | Not Available | Positive | 866790 - 867653 | 29789.0 |
| hypothetical protein | CLV88_10257 | Not Available | Negative | 867650 - 867820 | 6317.58 |
| pit family inorganic phosphate transporter | CLV88_10258 | Not Available | Negative | 868067 - 869551 | 51615.7 |
| trna1(val) a37 n6-methylase trmn6 | CLV88_10259 | Not Available | Negative | 869666 - 870418 | 26451.8 |
| octaprenyl-diphosphate synthase | CLV88_10260 | Not Available | Positive | 870695 - 871696 | 36116.7 |
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | CLV88_10261 | Not Available | Negative | 871780 - 872592 | 28671.6 |
| tetratricopeptide repeat protein | CLV88_10262 | Not Available | Negative | 872582 - 874291 | 62238.6 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_10263 | Not Available | Negative | 874504 - 875451 | 34739.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
