Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cu(i)-responsive transcriptional regulator | CLV88_10244 | Not Available | Negative | 853628 - 854020 | 14435.2 |
| cu+-exporting atpase | CLV88_10245 | Not Available | Negative | 854017 - 856560 | 87252.4 |
| xylulokinase | CLV88_10246 | Not Available | Positive | 856716 - 858170 | 50676.7 |
| d-xylose isomerase | CLV88_10247 | Not Available | Positive | 858167 - 859471 | 48349.6 |
| aldose 1-epimerase | CLV88_10248 | Not Available | Positive | 859472 - 860449 | 35226.3 |
| cytochrome c peroxidase | CLV88_10249 | Not Available | Positive | 860446 - 861750 | 47074.6 |
| acetyl-coa acetyltransferase | CLV88_10250 | Not Available | Positive | 862072 - 863247 | 40436.0 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | CLV88_10251 | Not Available | Positive | 863441 - 864166 | 25349.9 |
| putative dna-binding transcriptional regulator yafy | CLV88_10252 | Not Available | Negative | 864213 - 864917 | 26821.5 |
| carbon monoxide dehydrogenase subunit g | CLV88_10253 | Not Available | Positive | 865032 - 865487 | 16548.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
