Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exonuclease recj | CLV88_10234 | Not Available | Positive | 843349 - 845091 | 60975.8 |
| Trna-glu | Not Available | Not Available | Positive | 845261 - 845335 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 845389 - 845463 | Not Available |
| glycine/d-amino acid oxidase-like deaminating enzyme | CLV88_10237 | Not Available | Negative | 845531 - 846829 | 46012.7 |
| aldehyde dehydrogenase (nad+) | CLV88_10238 | Not Available | Negative | 846819 - 848321 | 53101.6 |
| dna-binding transcriptional lysr family regulator | CLV88_10239 | Not Available | Positive | 848546 - 849433 | 32091.6 |
| nucleotide-binding universal stress uspa family protein | CLV88_10240 | Not Available | Positive | 849592 - 850422 | 29647.4 |
| hypothetical protein | CLV88_10241 | Not Available | Positive | 850533 - 851273 | 26497.5 |
| tripartite atp-independent transporter dctm subunit | CLV88_10242 | Not Available | Negative | 851289 - 852611 | 46474.8 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_10243 | Not Available | Negative | 852608 - 853135 | 19084.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
