Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr family transcriptional regulator | CLV88_10214 | Not Available | Negative | 823058 - 823390 | 11940.5 |
| pimeloyl-acp methyl ester carboxylesterase | CLV88_10215 | Not Available | Positive | 823549 - 824484 | 33442.1 |
| lrp/asnc family transcriptional regulator | CLV88_10216 | Not Available | Negative | 824744 - 825211 | 17882.7 |
| selenocysteine lyase/cysteine desulfurase | CLV88_10217 | Not Available | Positive | 825319 - 826707 | 49538.7 |
| acetyltransferase (gnat) family protein | CLV88_10218 | Not Available | Negative | 826710 - 827336 | 22776.1 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_10219 | Not Available | Negative | 827333 - 828118 | 26916.2 |
| aminoglycoside phosphotransferase (apt) family kinase protein | CLV88_10220 | Not Available | Negative | 828111 - 829163 | 38461.0 |
| putative iron-regulated protein | CLV88_10221 | Not Available | Positive | 829363 - 830619 | 44619.4 |
| cxxc motif-containing protein (duf1111 family) | CLV88_10222 | Not Available | Positive | 830627 - 832174 | 55651.7 |
| hypothetical protein | CLV88_10223 | Not Available | Positive | 832176 - 833189 | 36334.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
