Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nodulation protein e | CLV88_1024 | Not Available | Negative | 810499 - 811707 | 41431.3 |
| acyl carrier protein | CLV88_1025 | Not Available | Negative | 811710 - 811973 | 9750.64 |
| rhodanese-related sulfurtransferase | CLV88_1026 | Not Available | Negative | 812188 - 812559 | 12997.6 |
| sir2-like protein | CLV88_1027 | Not Available | Negative | 813351 - 814703 | 50446.5 |
| gtp-binding protein lepa | CLV88_1028 | Not Available | Negative | 815011 - 816825 | 67405.2 |
| hypothetical protein | CLV88_1029 | Not Available | Negative | 816914 - 817579 | 24787.6 |
| class 3 adenylate cyclase | CLV88_10210 | Not Available | Positive | 817777 - 819435 | 60934.2 |
| hypothetical protein | CLV88_10211 | Not Available | Negative | 819432 - 820685 | 44563.6 |
| glyceraldehyde 3-phosphate dehydrogenase | CLV88_10212 | Not Available | Negative | 820737 - 821747 | 36603.5 |
| acr3 family arsenite transporter | CLV88_10213 | Not Available | Negative | 821761 - 822813 | 37001.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
