Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protease ftsh subunit hflc | CLV88_101797 | Not Available | Negative | 798275 - 799144 | 32424.9 |
| protease ftsh subunit hflk | CLV88_101798 | Not Available | Negative | 799146 - 800273 | 40153.0 |
| nadph-glutathione reductase | CLV88_101799 | Not Available | Negative | 800351 - 801706 | 48880.8 |
| ribose-5-phosphate isomerase | CLV88_101800 | Not Available | Negative | 801721 - 802509 | 28332.0 |
| hypothetical protein | CLV88_101801 | Not Available | Negative | 802717 - 803040 | 11478.9 |
| l-serine dehydratase | CLV88_101802 | Not Available | Positive | 803216 - 804589 | 48064.6 |
| transglycosylase-like protein with slt domain | CLV88_101803 | Not Available | Negative | 804611 - 805423 | 28736.7 |
| cyclic nucleotide-binding protein | CLV88_1021 | Not Available | Negative | 806068 - 809151 | 115085.0 |
| uncharacterized protein duf3307 | CLV88_1022 | Not Available | Positive | 809308 - 809691 | 14867.5 |
| acyl dehydratase | CLV88_1023 | Not Available | Negative | 809643 - 810506 | 31061.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
