Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101787 | Not Available | Positive | 790017 - 790451 | 16351.2 |
| exodeoxyribonuclease vii large subunit | CLV88_101788 | Not Available | Negative | 790448 - 791944 | 54615.9 |
| phosphoribosylamine--glycine ligase | CLV88_101789 | Not Available | Positive | 792020 - 793282 | 44027.4 |
| hypothetical protein | CLV88_101790 | Not Available | Positive | 793284 - 793889 | 21895.6 |
| hypothetical protein | CLV88_101791 | Not Available | Negative | 793890 - 794627 | 26600.7 |
| 2fe-2s ferredoxin | CLV88_101792 | Not Available | Negative | 794624 - 794947 | 11767.8 |
| dna-directed rna polymerase | CLV88_101793 | Not Available | Positive | 795074 - 795439 | 13465.6 |
| putative peptidoglycan binding protein | CLV88_101794 | Not Available | Positive | 795512 - 796045 | 19608.4 |
| serine protease do | CLV88_101795 | Not Available | Negative | 796093 - 797553 | 51375.7 |
| hypothetical protein | CLV88_101796 | Not Available | Negative | 798081 - 798275 | 6765.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
