Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol phosphatase-like enzyme (inositol monophosphatase family) | CLV88_101777 | Not Available | Negative | 782818 - 783567 | 26713.7 |
| transcriptional regulator with xre-family hth domain | CLV88_101778 | Not Available | Negative | 783670 - 784035 | 13744.5 |
| nadph2:quinone reductase | CLV88_101779 | Not Available | Positive | 784330 - 785292 | 33782.9 |
| lysr family transcriptional regulator | CLV88_101780 | Not Available | Negative | 785312 - 786205 | 32430.1 |
| uncharacterized protein yjis (duf1127 family) | CLV88_101781 | Not Available | Positive | 786332 - 786553 | 7943.61 |
| hypothetical protein | CLV88_101782 | Not Available | Positive | 786697 - 787434 | 26305.6 |
| hypothetical protein | CLV88_101783 | Not Available | Positive | 787603 - 787989 | 14163.0 |
| acetyltransferase (gnat) family protein | CLV88_101784 | Not Available | Negative | 787990 - 788502 | 19050.8 |
| lsu ribosomal protein l33p | CLV88_101785 | Not Available | Negative | 788609 - 788776 | 6394.99 |
| alkane 1-monooxygenase | CLV88_101786 | Not Available | Positive | 788986 - 790020 | 38100.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
