Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rep family atp-dependent dna helicase | CLV88_101767 | Not Available | Negative | 768959 - 771397 | 90646.9 |
| diguanylate cyclase (ggdef)-like protein | CLV88_101768 | Not Available | Positive | 771620 - 773452 | 68409.3 |
| l-lactate dehydrogenase (cytochrome) | CLV88_101769 | Not Available | Positive | 773562 - 774695 | 41545.5 |
| rhodanese-related sulfurtransferase | CLV88_101770 | Not Available | Negative | 774692 - 775150 | 16412.9 |
| pyruvate carboxylase | CLV88_101771 | Not Available | Positive | 775388 - 778828 | 125975.0 |
| hypothetical protein | CLV88_101772 | Not Available | Negative | 778860 - 779699 | 31942.9 |
| hypothetical protein | CLV88_101773 | Not Available | Negative | 779732 - 780592 | 33291.6 |
| Trna-gly | Not Available | Not Available | Positive | 781009 - 781080 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 781245 - 781316 | Not Available |
| cytosine/adenosine deaminase-related metal-dependent hydrolase | CLV88_101776 | Not Available | Negative | 781366 - 782706 | 47730.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
