Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein imub | CLV88_101757 | Not Available | Negative | 760113 - 761777 | 61081.6 |
| putative surface protein with fasciclin (fas1) repeats | CLV88_101758 | Not Available | Positive | 762060 - 762569 | 17130.8 |
| cytochrome c556 | CLV88_101759 | Not Available | Positive | 762681 - 763121 | 15769.9 |
| peptidase inhibitor i78 family protein | CLV88_101760 | Not Available | Negative | 763154 - 763456 | 10526.6 |
| s-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase | CLV88_101761 | Not Available | Positive | 763597 - 764733 | 39984.1 |
| ost-hth/lotus domain-containing protein | CLV88_101762 | Not Available | Positive | 764848 - 765528 | 24125.0 |
| uncharacterized protein (tigr02118 family) | CLV88_101763 | Not Available | Positive | 765836 - 766144 | 10678.7 |
| atp-binding protein involved in chromosome partitioning | CLV88_101764 | Not Available | Negative | 766205 - 767212 | 35096.3 |
| uncharacterized protein yjis (duf1127 family) | CLV88_101765 | Not Available | Positive | 767520 - 767735 | 8008.51 |
| glutathione s-transferase | CLV88_101766 | Not Available | Negative | 768273 - 768899 | 23165.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
