Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate permease | CLV88_101747 | Not Available | Positive | 751402 - 752574 | 41299.3 |
| aspartate semialdehyde dehydrogenase | CLV88_101748 | Not Available | Positive | 752727 - 753749 | 37344.6 |
| hypothetical protein | CLV88_101749 | Not Available | Negative | 753799 - 754164 | 13144.9 |
| hypothetical protein | CLV88_101750 | Not Available | Positive | 754679 - 754816 | 5357.48 |
| carbonic anhydrase | CLV88_101751 | Not Available | Negative | 754892 - 755542 | 23857.2 |
| hypothetical protein | CLV88_101752 | Not Available | Positive | 755692 - 756066 | 13433.1 |
| leucyl aminopeptidase | CLV88_101753 | Not Available | Positive | 756137 - 757525 | 48676.6 |
| cell wall-associated nlpc family hydrolase | CLV88_101754 | Not Available | Positive | 757525 - 758403 | 31336.8 |
| guanidinopropionase | CLV88_101755 | Not Available | Positive | 758400 - 759365 | 34688.3 |
| uncharacterized protein duf2794 | CLV88_101756 | Not Available | Negative | 759491 - 759838 | 13292.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
