Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysozyme | CLV88_101727 | Not Available | Negative | 732366 - 733178 | 30513.2 |
| lsu ribosomal protein l19p | CLV88_101728 | Not Available | Positive | 733597 - 733971 | 13819.7 |
| lsu ribosomal protein l31p | CLV88_101729 | Not Available | Positive | 733983 - 734204 | 8213.87 |
| hypothetical protein | CLV88_101730 | Not Available | Negative | 734312 - 735061 | 26860.6 |
| sugar phosphate permease | CLV88_101731 | Not Available | Negative | 735176 - 736408 | 43523.6 |
| cystathionine gamma-synthase | CLV88_101732 | Not Available | Negative | 736495 - 737637 | 40543.9 |
| ribosomal large subunit pseudouridine synthase e | CLV88_101733 | Not Available | Positive | 737737 - 738285 | 20644.8 |
| chromosome partitioning protein | CLV88_101734 | Not Available | Positive | 738428 - 739237 | 29839.2 |
| adenylate/guanylate cyclase | CLV88_101735 | Not Available | Negative | 739267 - 740490 | 44839.5 |
| marr family transcriptional regulator | CLV88_101736 | Not Available | Negative | 740536 - 740976 | 17220.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
