Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rimj/riml family protein n-acetyltransferase | CLV88_101717 | Not Available | Positive | 725147 - 725695 | 20231.8 |
| rimj/riml family protein n-acetyltransferase | CLV88_101718 | Not Available | Positive | 725695 - 726300 | 22726.7 |
| chorismate mutase | CLV88_101719 | Not Available | Positive | 726293 - 726589 | 11208.4 |
| ssu ribosomal protein s16p | CLV88_101720 | Not Available | Positive | 726651 - 727016 | 13559.2 |
| cob(ii)yrinic acid a,c-diamide reductase | CLV88_101721 | Not Available | Positive | 727034 - 727663 | 23384.8 |
| 16s rrna processing protein rimm | CLV88_101722 | Not Available | Positive | 727806 - 728300 | 17385.9 |
| hypothetical protein | CLV88_101723 | Not Available | Positive | 728498 - 729295 | 29727.7 |
| trna (guanine37-n(1)-) methyltransferase | CLV88_101724 | Not Available | Positive | 729336 - 730136 | 29430.2 |
| macrocin-o-methyltransferase tylf | CLV88_101725 | Not Available | Positive | 730222 - 730977 | 28088.3 |
| fad dependent oxidoreductase | CLV88_101726 | Not Available | Negative | 731002 - 732297 | 45999.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
