Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fmn-dependent nadh-azoreductase | CLV88_101707 | Not Available | Positive | 718163 - 718702 | 18869.3 |
| doxx-like protein | CLV88_101708 | Not Available | Positive | 718724 - 719071 | 12256.5 |
| phytanoyl-coa dioxygenase phyh | CLV88_101709 | Not Available | Negative | 719109 - 719864 | 28195.8 |
| ala-trna(pro) deacylase | CLV88_101710 | Not Available | Negative | 719890 - 720426 | 20271.4 |
| 2,4-dienoyl-coa reductase-like nadh-dependent reductase (old yellow enzyme family) | CLV88_101711 | Not Available | Positive | 720540 - 721844 | 48146.9 |
| Ncrna_class:other | Not Available | Not Available | Positive | 721914 - 721965 | Not Available |
| signal recognition particle subunit ffh/srp54 (srp54) | CLV88_101713 | Not Available | Positive | 722030 - 723562 | 54561.4 |
| rimj/riml family protein n-acetyltransferase | CLV88_101714 | Not Available | Positive | 723563 - 724087 | 19041.9 |
| rimj/riml family protein n-acetyltransferase | CLV88_101715 | Not Available | Positive | 724084 - 724623 | 19595.1 |
| rimj/riml family protein n-acetyltransferase | CLV88_101716 | Not Available | Positive | 724620 - 725150 | 19540.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
