Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f-type h+-transporting atpase subunit b | CLV88_101697 | Not Available | Negative | 711867 - 712424 | 19785.7 |
| f-type h+-transporting atpase subunit b | CLV88_101698 | Not Available | Negative | 712429 - 712956 | 18232.5 |
| atp synthase f0 subcomplex c subunit | CLV88_101699 | Not Available | Negative | 713039 - 713263 | 7162.83 |
| atp synthase f0 subcomplex a subunit | CLV88_101700 | Not Available | Negative | 713316 - 714074 | 27237.1 |
| atp synthase protein i | CLV88_101701 | Not Available | Negative | 714077 - 714412 | 12320.0 |
| lysr family glycine cleavage system transcriptional activator | CLV88_101702 | Not Available | Negative | 714592 - 715512 | 34087.6 |
| hypothetical protein | CLV88_101703 | Not Available | Positive | 715619 - 715858 | 9406.31 |
| arsr family transcriptional regulator | CLV88_101704 | Not Available | Positive | 715901 - 716236 | 12487.2 |
| eama-like transporter family protein | CLV88_101705 | Not Available | Negative | 716289 - 717170 | 31640.3 |
| lysr family transcriptional regulator | CLV88_101706 | Not Available | Negative | 717167 - 718048 | 32782.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
