Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | CLV88_101677 | Not Available | Negative | 691264 - 692016 | 27908.8 |
| oxygen-independent coproporphyrinogen-3 oxidase | CLV88_101678 | Not Available | Positive | 692075 - 693430 | 49657.4 |
| microcin c transport system atp-binding protein | CLV88_101679 | Not Available | Negative | 693543 - 695141 | 57976.4 |
| microcin c transport system permease protein | CLV88_101680 | Not Available | Negative | 695138 - 696244 | 41414.5 |
| microcin c transport system permease protein | CLV88_101681 | Not Available | Negative | 696244 - 697332 | 39980.5 |
| microcin c transport system substrate-binding protein | CLV88_101682 | Not Available | Negative | 697340 - 699277 | 72528.8 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 699454 - 699554 | Not Available |
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | CLV88_101684 | Not Available | Negative | 699598 - 701457 | 67484.5 |
| nad+ diphosphatase | CLV88_101685 | Not Available | Positive | 701808 - 702776 | 35733.5 |
| hypothetical protein | CLV88_101686 | Not Available | Positive | 702826 - 703293 | 17947.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
