Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cu2+-exporting atpase | CLV88_101667 | Not Available | Negative | 679999 - 682185 | 76025.7 |
| nitrogen fixation protein fixh | CLV88_101668 | Not Available | Negative | 682189 - 682650 | 16677.0 |
| cytochrome c oxidase accessory protein fixg | CLV88_101669 | Not Available | Negative | 682650 - 683987 | 50143.9 |
| arac-like dna-binding protein | CLV88_101670 | Not Available | Negative | 684203 - 685195 | 37019.5 |
| lysr family glycine cleavage system transcriptional activator | CLV88_101671 | Not Available | Negative | 685558 - 686433 | 31669.2 |
| cytochrome c oxidase cbb3-type subunit 3 | CLV88_101672 | Not Available | Negative | 686766 - 687638 | 31406.1 |
| cytochrome c oxidase cbb3-type subunit 4 | CLV88_101673 | Not Available | Negative | 687635 - 687820 | 7226.54 |
| cytochrome c oxidase cbb3-type subunit 2 | CLV88_101674 | Not Available | Negative | 687833 - 688561 | 27375.5 |
| cytochrome c oxidase cbb3-type subunit 1 | CLV88_101675 | Not Available | Negative | 688577 - 690178 | 59877.9 |
| universal stress protein family protein | CLV88_101676 | Not Available | Positive | 690398 - 691237 | 30227.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
